Start with the thing every listing assumes you already know and none of them explains: Tour A, Tour B, Tour C and Tour D are four fixed routes, not four grades of the same trip. They were set by the local boat association, each has its own five or six stops, and the letters carry no ranking at all. Booking «the best one» is not a question with an answer until you know what is on each.
Tour A is the lagoons. Big Lagoon, Small Lagoon, Secret Lagoon, Shimizu Island and Seven Commandos Beach. It is the most booked route by a wide margin, and the shared version on this page carries 1,974 reviews — more than everything else here put together.
Tour C is the far beaches. Helicopter Island, Matinloc Shrine, Secret Beach, Hidden Beach and Tapiutan. These sit further out in the bay, which makes them quieter, more dramatic and the first stops cancelled when the sea gets up.
Tour B and Tour D are the quiet ones. B takes in Snake Island with its sandbar, Pinagbuyutan, Entalula and two caves; D covers Cadlao Lagoon, Paradise Beach, Pasandigan and Natnat. Fewer boats go, and people who have already done A and C often rate them higher for exactly that reason.
The Big Lagoon has a rule worth knowing before you book. Boats are no longer allowed inside. The bangka waits at the entrance and you paddle in by kayak, rented there for a few hundred pesos in cash. If nobody in your group wants to paddle, the single most famous stop in El Nido is something you look at from outside.
There is a fee on top of every trip. The Eco-Tourism Development Fee is 400 pesos a person in 2026. You pay it once, it is valid for ten days, and it covers all the island tours — but it is not in the price you paid online, and it is collected in cash.
And the last thing, which decides more than the route does: the lagoons are busy by mid-morning in the dry season. A private bangka is not about comfort here; it is about leaving early enough to be in the Big Lagoon before eight boats arrive behind you.